PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG249600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 309aa    MW: 33409.3 Da    PI: 5.4749
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG249600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.6e-10150193347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT +E+  ++ +   + g+ Wk+ + +    R++ q+ s++qky
  Pavir.1NG249600.1.p 150 PWTLDEHSHFLAGLDNYKGN-WKAMSMEYLPSRSASQIASHYQKY 193
                          8*****************88.****755555*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.566143198IPR017930Myb domain
SuperFamilySSF466891.94E-9145198IPR009057Homeodomain-like
SMARTSM007172.2E-5147196IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.1E-8148196IPR006447Myb domain, plants
PfamPF002497.6E-7150193IPR001005SANT/Myb domain
CDDcd001673.68E-4150193No hitNo description
Gene3DG3DSA:1.10.10.608.1E-8150196IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MPHDEHAAAP PPPAAPEPEP EPEREPTWTR RDDKCLELLL VTTSIVPIHF ASDIIGKTPA  60
QMERRCRFMF AELRHVLEAQ DGETPPEWDM EVAAAAEAPA AEGEAPEPPA PSALPVAAEE  120
DSALPTAVGG GGGGTPEGRQ VRRRKSKAVP WTLDEHSHFL AGLDNYKGNW KAMSMEYLPS  180
RSASQIASHY QKYQNRKKQR KRDECKRASI HDITEPASAA VVAVAVAGGD AAAAWRKGDG  240
DLPRVVASAR GKEDEPREPQ VQSGEPTRGG DGPAGTGEEF PGPDDPGTLL TYRRAKRLYT  300
YIYGRMAI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RRRKSK
2195201RKKQRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG249600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821294.18e-8811-beta-hydroxysteroid dehydrogenase 1B-like
TrEMBLA0A3L6QFU21e-115A0A3L6QFU2_PANMI; Transcription factor DIVARICATA-like
STRINGPavir.Aa02423.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-11Homeodomain-like transcriptional regulator