PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG247800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 418aa    MW: 47042.4 Da    PI: 5.8446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG247800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00044467223
                         EETTTTEEESSHHHHHHHHHH..T CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                         +C+dCgk+++++ +   H ++  H
  Pavir.1NG247800.1.p 44 VCSDCGKPCRSQTEVDLHTKRtgH 67
                         8***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469348.93E-16103169IPR009060UBA-like
Gene3DG3DSA:1.10.8.103.4E-10106160No hitNo description
CDDcd142901.06E-19115163No hitNo description
PROSITE profilePS5003010.74115156IPR015940Ubiquitin-associated domain
PfamPF006275.7E-6117153IPR015940Ubiquitin-associated domain
SMARTSM001650.0033117155IPR015940Ubiquitin-associated domain
SuperFamilySSF1435035.62E-29307413IPR018997PUB domain
CDDcd104612.15E-65311417No hitNo description
PfamPF094093.9E-24324395IPR018997PUB domain
SMARTSM005802.0E-26327390IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAGLSLRCGD CGAQLRSVEE AQAHAEVTNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL  60
HTKRTGHKDF ADKTAEAAKP IDLEAPLKPA SSSEAMDVDA LASASEEPQE MVVPEVNKEM  120
LADLEAMGFA TARATRALHF SGNSTIEGAI NWLSEHQEDA DIDEMPLVPA TSKTEANKPS  180
LTPEEMKIKA QELRERARKK KEEEERRMER EREKERIRIG KELLEAKRIE EQNERKRMIE  240
LRRLEKEEEK RAREKIRQKL EEDKAERRRK LGLPPEDPAA SKPSAPPPVE EKKSALPIRP  300
ATKAERMRDC LRNLKQQNKD DDAKVKRAFQ TLLTYIGNVA KNPDEEKFRK IRLTNATFQE  360
RVGNLHGGIE FLELCGFEKL EGNEFLFLPR DKVDKAILNT AGAELNSAIT NPFFGVL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.113180.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG247800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550290.0BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815335.10.0chromatin assembly factor 1 subunit A
TrEMBLA0A2S3GPA10.0A0A2S3GPA1_9POAL; Uncharacterized protein
STRINGPavir.Aa02132.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517