PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG217200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 384aa MW: 42341.9 Da PI: 7.7336 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.6e-08 | 157 | 220 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 r+ WT+ ++e+lv+a ++ + W I+ t + +Rt+kq+k++w +y Pavir.1NG217200.1.p 157 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdllRHRTAKQLKDHWSMY 220 789**********************************************************887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 3.3E-10 | 38 | 54 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 61 | 73 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 91 | 112 | No hit | No description |
PRINTS | PR01217 | 3.3E-10 | 112 | 128 | No hit | No description |
PROSITE profile | PS50090 | 6.411 | 152 | 221 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.13E-6 | 154 | 223 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-4 | 156 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-6 | 156 | 219 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.15E-4 | 159 | 220 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 384 aa Download sequence Send to blast |
MQSYFDLLNA DPERSNTNTP GTNASEEEFD YSPLHRRSET APPSQPRALF PPAPGAFIGA 60 PPPYPYPPYP YPPYPYPPAP AASRVAPPPY PYPAPMTDAP PPYPYPPYPY PPYPYPPPPT 120 FTTSAPHGHA GGAASAGSEN EGGGTTAPCR PAIPKKRNEW TPADEEKLVN AWLMHSVDCV 180 DGNSKSGPTF WGQISDTYNA TTDLLRHRTA KQLKDHWSMY NARVSLFNAI YNQEVSKRQS 240 GADDDMVMDE AKARYARRAG HEFKLFHWWE AVRHQPKWSV KHGGGPNIDV SKRSRLGASG 300 EYISGSRETD EEVNRPPGRD RSKAAARKGK GKVGSSSHTS TDSVDMGEKL EDLCKITHEY 360 AQAKLWKQWN ILSSRSTDGM TDA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG217200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008670977.1 | 9e-79 | ribonuclease 3 | ||||
TrEMBL | A0A1D6E9H9 | 6e-77 | A0A1D6E9H9_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6FXG8 | 4e-77 | A0A3L6FXG8_MAIZE; Glutathione S-transferase T3 | ||||
STRING | Pavir.J22374.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3263 | 3 | 37 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG217200.1.p |