PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG201500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 280aa MW: 30461.1 Da PI: 7.6436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG201500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.7e-07	2	40	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 RRd++N+ f+eL l ++ ++++Ka+iL +++ +k+L Pavir.1NG201500.2.p 2 RRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 40 **************997....799*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.823	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-10	2	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-4	2	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.17E-4	2	44	No hit	No description
SuperFamily	SSF47459	1.03E-9	2	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MRRDKLNEQF QELGNTLDPD RPRNDKATIL GDTIQMLKDL TSQVNKLKGD YTSLSEEARE 60 LTQEKNELRD EKASLKSEVD NLNNQCQQRM RLLYPWAGME PSVVIGPPPA YPYPVPLAIP 120 SGSVPMHPRL QAYPFLHSQT SGTIPNACTP CMAYTQPCHP PNDQPSNKFN SPVAHSSSHR 180 SNSPARDCRS KPSTLRQASC GVRTTGVCDV ATDLELKTPG SSGPSHSEIT TKDSSSDMKT 240 KKQCIKQINC STLTEGTSSS RCSSSGHPDV SNTVGDGCL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.42088	7e-38	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG201500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815621.1	1e-170	transcription factor bHLH121 isoform X3
TrEMBL	A0A2T7F667	1e-170	A0A2T7F667_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F685	1e-169	A0A2T7F685_9POAL; Uncharacterized protein
STRING	Pavir.Aa02015.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	8e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.1NG201500.2.p