PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG201500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 325aa    MW: 35434.6 Da    PI: 8.0138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG201500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.2e-103685154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         r++ +  rE+ RRd++N+ f+eL   l ++     ++++Ka+iL  +++ +k+L
  Pavir.1NG201500.1.p 36 RKVQKADREKMRRDKLNEQFQELGNTLDPD----RPRNDKATILGDTIQMLKDL 85
                         5677889********************997....799***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-1332104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-73389No hitNo description
Gene3DG3DSA:4.10.280.105.8E-1334108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.8053585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-73685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-74191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDPCGRQPPE VGLFHPRDAD LSQRTEGKGQ GPSSTRKVQK ADREKMRRDK LNEQFQELGN  60
TLDPDRPRND KATILGDTIQ MLKDLTSQVN KLKGDYTSLS EEARELTQEK NELRDEKASL  120
KSEVDNLNNQ CQQRMRLLYP WAGMEPSVVI GPPPAYPYPV PLAIPSGSVP MHPRLQAYPF  180
LHSQTSGTIP NACTPCMAYT QPCHPPNDQP SNKFNSPVAH SSSHRSNSPA RDCRSKPSTL  240
RQASCGVRTT GVCDVATDLE LKTPGSSGPS HSEITTKDSS SDMKTKKQCI KQINCSTLTE  300
GTSSSRCSSS GHPDVSNTVG DGCL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.420888e-38leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG201500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815621.10.0transcription factor bHLH121 isoform X3
SwissprotQ9LT238e-65BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2S3GP780.0A0A2S3GP78_9POAL; Uncharacterized protein
STRINGPavir.Aa02015.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117672529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-65bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]