PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG188900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 267aa    MW: 30243.1 Da    PI: 10.3833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG188900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-1266110348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +W++eE   l++ v+++ +++W+t+ar +  gR++ qc++rw  yl
  Pavir.1NG188900.3.p  66 KWSQEEYGNLIQMVNLHSSKSWSTVARGIT-GRSPRQCRDRWMFYL 110
                          8****************************9.***********9875 PP
2Myb_DNA-binding45.22.1e-14117157244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a k +G++ W + a+ ++ gRt+k +k++w
  Pavir.1NG188900.3.p 117 QPWSEHEDIKLIQAQKIHGSK-WCKLAKLFP-GRTGKAVKNHW 157
                          79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.01159110IPR017877Myb-like domain
SuperFamilySSF466892.7E-2663157IPR009057Homeodomain-like
SMARTSM007171.3E-863112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1766117IPR009057Homeodomain-like
CDDcd001671.23E-866110No hitNo description
PfamPF139211.3E-1367127No hitNo description
PROSITE profilePS5129419.212111165IPR017930Myb domain
SMARTSM007173.7E-12115163IPR001005SANT/Myb domain
CDDcd001671.10E-10118157No hitNo description
Gene3DG3DSA:1.10.10.602.9E-19118166IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRRGGGGAPR RRSSGGSTCC SGEVDWIADE RGELQRPSKH LKDEEHKRTA DFLPHKKGNS  60
LKRSRKWSQE EYGNLIQMVN LHSSKSWSTV ARGITGRSPR QCRDRWMFYL DPAVNNQPWS  120
EHEDIKLIQA QKIHGSKWCK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLV SGLPEQFLYM  180
PKDISVTKNK GSSTVQSDHD SSTNIHVSSD WAVRPNSEQG LAENGRNEST LKGKSYDSMH  240
EGLFCHREFS WVPAKRGINK FYGSCT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-256716710110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG188900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.11e-155transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF61e-154A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.Aa02681.1.p1e-175(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.19e-31myb domain protein 3r-4