PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG188900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 348aa    MW: 38989.9 Da    PI: 10.4196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG188900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-1266110348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +W++eE   l++ v+++ +++W+t+ar +  gR++ qc++rw  yl
  Pavir.1NG188900.2.p  66 KWSQEEYGNLIQMVNLHSSKSWSTVARGIT-GRSPRQCRDRWMFYL 110
                          8****************************9.***********9875 PP
2Myb_DNA-binding44.73.2e-14117157244
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++W++ Ed +l++a k +G++ W + a+ ++ gRt+k +k++w
  Pavir.1NG188900.2.p 117 QPWSEHEDIKLIQAQKIHGSK-WCKLAKLFP-GRTGKAVKNHW 157
                          79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.01159110IPR017877Myb-like domain
SuperFamilySSF466894.77E-2663157IPR009057Homeodomain-like
SMARTSM007171.3E-863112IPR001005SANT/Myb domain
CDDcd001679.16E-966110No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1566114IPR009057Homeodomain-like
PfamPF139212.0E-1367127No hitNo description
PROSITE profilePS5129419.212111165IPR017930Myb domain
SMARTSM007173.7E-12115163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-19115166IPR009057Homeodomain-like
CDDcd001678.05E-11118157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MRRGGGGAPR RRSSGGSTCC SGEVDWIADE RGELQRPSKH LKDEEHKRTA DFLPHKKGNS  60
LKRSRKWSQE EYGNLIQMVN LHSSKSWSTV ARGITGRSPR QCRDRWMFYL DPAVNNQPWS  120
EHEDIKLIQA QKIHGSKWCK LAKLFPGRTG KAVKNHWPSL MRKQMKSDLV SGLPEQFLYM  180
PKDISVTKNK GSSTVQSDHD SSTNIHVSSD WAVRPNSEQG LAENGRNEST LKGKSYDSMH  240
GNGSVSHSVN VSEKVDWQIA ISNSLSCMDQ KASSATASFP GSLPKEESTN FMEVAPNRGL  300
STTSRKLHRW NVILPRKFSS DRTCTSCRIS KRVCSLAFKF SCNIYSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24671657105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-24221655159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-24221655159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-24671657105C-Myb DNA-Binding Domain
1msf_C3e-24671657105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG188900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF60.0A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.Aa02681.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-30myb domain protein 3r-4