PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG188500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 651aa MW: 73084.2 Da PI: 8.5569 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9.1e-14 | 75 | 118 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + rW++eE ell ++v+++G+++W tIa ++ R + c srw Pavir.1NG188500.1.p 75 KCRWSPEENELLTQLVNKHGTKNWQTIACALP-DRNAHACLSRWK 118 569*****************************.***********7 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.1e-14 | 127 | 169 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W + a++++ gRt + +k++w+ Pavir.1NG188500.1.p 127 KEAWSQQEELRLIRAHQIYGNK-WCKMAKHFP-GRTNNALKEHWR 169 579*******************.*********.***********7 PP | |||||||
3 | Myb_DNA-binding | 41.9 | 2.3e-13 | 335 | 378 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +grW +eE e l + v+++G ++W tIa+ ++ gR + qc+ rw Pavir.1NG188500.1.p 335 KGRWLAEENEMLTKMVTKHGLKSWQTIASAIP-GRNAQQCRIRWT 378 79******************************.***********5 PP | |||||||
4 | Myb_DNA-binding | 34.3 | 5.7e-11 | 388 | 429 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++E+++l++a++ +G+ W + ++++ gRt +k++w+ Pavir.1NG188500.1.p 388 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 429 67*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.289 | 70 | 119 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.19E-26 | 73 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-11 | 74 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-19 | 77 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.13E-10 | 77 | 121 | No hit | No description |
Pfam | PF13921 | 9.8E-13 | 78 | 138 | No hit | No description |
PROSITE profile | PS51294 | 21.716 | 122 | 176 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-14 | 126 | 174 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 129 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 131 | 176 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.77 | 330 | 385 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-23 | 333 | 428 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 334 | 383 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 336 | 388 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.64E-9 | 337 | 381 | No hit | No description |
Pfam | PF13921 | 9.9E-13 | 338 | 395 | No hit | No description |
PROSITE profile | PS51294 | 13.775 | 386 | 436 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-10 | 386 | 434 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-15 | 389 | 436 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.30E-8 | 390 | 429 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MEQSSGGMPR QRRDVSSTSH SGNSNAVAED MSGIPHETVK HYQDVESEKT GVPPCKKSRH 60 SFNECSSLKN LERTKCRWSP EENELLTQLV NKHGTKNWQT IACALPDRNA HACLSRWKYI 120 LDPAINKEAW SQQEELRLIR AHQIYGNKWC KMAKHFPGRT NNALKEHWRG SMKRKLDSYL 180 ASGLLEQVPD LHENLSIPQS NQSDIPKDSK VSSDRIRFSS IISTRSKFKQ KIRELSEDAD 240 ASVGESSDFI YAKAFDAHST RVSENIIAKP QKCATARKKL DLVSSPVKLK SDVPPETVKQ 300 HCQEIESEKT EGPPCKKNGY CFKQGSTLKN SERTKGRWLA EENEMLTKMV TKHGLKSWQT 360 IASAIPGRNA QQCRIRWTRS LDPAINKEDW SEQEELKLIR AHQIYGSQWL KMVKHFPGRT 420 NHALKEHWRG RMKGKLNYYL ASGMLEQIPD LQENLSVPEG SHSEIPKDGQ GSSERNRPTS 480 LPLRPKSKSD LSELDENAYT SEDESSDCMF PKGLDADSAK VSEKVMAKSK QRARARRKLD 540 FLSTPVELKV CTAAASCQRP PPKMEQTIPA SDNSSPSDAC QDIPQNTASE RVVVIPTAAS 600 NPHNDVHSWA APDPCSPEIH KANASDPLDL SYCDDLIIDS PPYLHGSSFI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 78 | 437 | 6 | 110 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6152 | 0.0 | callus| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG188500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791248.1 | 0.0 | transcription factor MYB3R-2-like | ||||
TrEMBL | A0A2S3GN72 | 0.0 | A0A2S3GN72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa02683.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14263 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 5e-39 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG188500.1.p |