PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG176100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 807aa    MW: 89404.2 Da    PI: 4.8316
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG176100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07655697145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Pavir.1NG176100.1.p 655 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 697
                          89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-10646703IPR009057Homeodomain-like
PfamPF159639.3E-24648727No hitNo description
Gene3DG3DSA:1.10.10.606.1E-5652701IPR009057Homeodomain-like
PROSITE profilePS512939.022653704IPR017884SANT domain
SMARTSM007178.1E-8654702IPR001005SANT/Myb domain
CDDcd001673.46E-5657698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MIDDEANFDI IFDASEDVQT TAKFRPKQRA KPRKTALSSR SAASNPTVEN GVGKLGALNQ  60
VSSSKELTNQ ERASLTCPGS DIPDDKAGSR GILETPLDDV LTVPLGPPGG TSAADRISQG  120
DKQNADLSKL ATHQESLVVS DIQVSPASSC GKTIDDVVDF EEMFGAQDKE ERVAKFQPKV  180
QKKLLKTAKS QKTNQKVEAS TVDVAPQNET GDDIQTRVHC NQLQGPKCHG SVQTPDSEGL  240
LATSNSDVGN LENLDSVHEV SVQEETIVKF CPKLRPKPMI VSSKVVSTND NITTATRMVG  300
ICAESNDMST KPKDQETITA SATSSAQDVD ATVDLDHHNE LVNSPTDGTE LMVGKVSAEA  360
TCKSQSNVVR EKGKGKSVSF ALSDASGVVT PTDTNSEMGN FSDSCKDKLI DENLSNLSQQ  420
TSEKEHNDNE SWFDEGDPLD HAVEPPPKLG IGENRSSMKL RSRKKTQKDG TPKHTDDYFD  480
EDLVEPSLVE EDNDSGDDYT AGTNRKVRKK SRGDVEEPQQ RNVQKDKSQV SSRGRKRTLK  540
DASAEKTEKK LTHRIRQRRS KEVKTLLEKP HDEINPMKLS AAHLRLLQEA RERVNAKENP  600
SGPSSNTSSF QFHDDMDDLD YGDEEGRNFD NDRTENHVQN MKKLNYHSYM NKQTRGKWSK  660
SDTDVFYQGL RQFGSDFAMI QQLLPDKTRQ QVRAKFKTEE KKNPLLVHDA IIHRSGDNLY  720
FKKVIKNLNI EDVAQQEINN THKQDGASSE RGPGKEDVLD DFIHEEDDSN WLDEEPGIQM  780
PDVQNERPSG NDEDDDGDLG DVFDWY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.71480.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG176100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698058.10.0uncharacterized protein LOC101786485 isoform X2
TrEMBLA0A3L6RTH80.0A0A3L6RTH8_PANMI; Uncharacterized protein
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-34MYB_related family protein