PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG169100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 529aa    MW: 55290.9 Da    PI: 11.5535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG169100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.9e-15131174755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + ErrRR+r+N+++  Lr+++P+      +K++Ka+iL+ A+eYI +Lq
  Pavir.1NG169100.2.p 131 ATERRRRRRLNDRLYALRSVVPNI-----TKMDKASILRDAIEYILQLQ 174
                          67*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18130193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-17131187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-13131174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-8140170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MGFSSGGLYH ADIRRLPIQQ QPIAVGTLSR PVRAVVPHPQ PLRCAPPSSS SGRRPRAMDP  60
TMGDSLECLL WDCLESEALQ SLCIGADGDG GGGGQQHCVG YSSSPDAGSN SSAATAGAGS  120
IGSRPGSSIV ATERRRRRRL NDRLYALRSV VPNITKMDKA SILRDAIEYI LQLQQLERQL  180
LDELGLLEAG AGAHHLLVGT PMPSAGAAED DDDRAGHAAV SPTRRMKRNP SLSTPAPSSR  240
HCPSSPPVDA LQVRVSGAGD KVLVVSVACR HRRDAVAKLC RALEGLRLRV IAANVTAASG  300
TVTHTALVQL AGINERGSGP ASTTAVMRAP AVGVLRCSDG GLLPRPTVSS SPSPSFLVLL  360
SPSFSVSSSW RIPSTPSLLS RAPLSVCWRR VVGGLWRARP GSTRPRRRRC SSSFPGHGDD  420
GVVVAWLCRE AVPDGARTGA PRSRAGTSKR RQTRADRAAA AQIWPSAVMG LRGHPAAASA  480
PMAPPRGPPP HRQGGGHPLC RASSSLPPPL PGSVDAESKT LESARRRG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132139ERRRRRRL
2133138RRRRRR
3136143RRRLNDRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.13813e-32leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG169100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.12e-79transcription factor bHLH35 isoform X1
STRINGPavir.Aa02630.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-20bHLH family protein