PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG154000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 336aa    MW: 37799.2 Da    PI: 5.6492
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG154000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.4e-35381292102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++++ ++sws+++nsf+v+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Pavir.1NG154000.1.p  38 FLTKTYDMVDDPTTDAVVSWSATNNSFIVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKMDPDR---------WEFANEGFLRGQR 118
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.1NG154000.1.p 119 HLLKNIRRRKP 129
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.7E-6134127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3534127IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-203861IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434077101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.1E-2089101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MNHGMLNSVK VESRSSAVTA NGQPRPMDGL HDGGPPPFLT KTYDMVDDPT TDAVVSWSAT  60
NNSFIVWDPH IFGTVLLPRY FKHNNFSSFV RQLNTYGFRK MDPDRWEFAN EGFLRGQRHL  120
LKNIRRRKPP HSSPNQQSLG SYLEVGHFGY DEEIDQLKRD KQLLMAEVVK LRQEQQNTKS  180
DLQAMEEKLK DTEQKQQQMM AFMARVMQNP EFMSQLISQR EMRKGLEDAI SKKRRRCIDQ  240
GPEADSMGNG SSLEQGSQAA FEPQEQVESL ANGVPSDLES SSVEAKGFEV QQGVSCCGSE  300
HLKRRPSGEL NDDFWEDLLH EGGLGAEAGN ASWSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-263612718120Heat shock factor protein 1
5d5u_B2e-263612727129Heat shock factor protein 1
5d5v_B2e-263612727129Heat shock factor protein 1
5d5v_D2e-263612727129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.153740.0callus| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG154000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0418770.0BT041877.1 Zea mays full-length cDNA clone ZM_BFb0071P12 mRNA, complete cds.
GenBankBT0884100.0BT088410.1 Zea mays full-length cDNA clone ZM_BFc0182A01 mRNA, complete cds.
GenBankEU9569230.0EU956923.1 Zea mays clone 1577511 heat shock factor protein HSF30 mRNA, complete cds.
GenBankJX4284940.0JX428494.1 Zea mays subsp. mays clone pUT3092 HSF11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794070.10.0heat stress transcription factor A-2e-like
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA0A2S3IHJ80.0A0A2S3IHJ8_9POAL; Uncharacterized protein
STRINGPavir.J04151.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]