PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG145800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 352aa    MW: 38738 Da    PI: 7.2958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG145800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52101401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+   ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Pavir.1NG145800.1.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69****************************.9***************943455444445******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+++    g+++gl+ktLvfy+grap+g+ktdW+mheyrl
  Pavir.1NG145800.1.p  99 RDKAIFLGnAGRKIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140
                          *****99767899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-597162IPR003441NAC domain
PROSITE profilePS5100559.09910162IPR003441NAC domain
PfamPF023651.6E-2711140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHSSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR KIGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL DDDSAEVPIT EDGWVVCRVF MKKSIQRGFD QQGVAAAGDD  180
DELQSFHHSP GGATPPVDQK LGLHQLMHGV FPAFDPSMHL PHLTSAEAPP LGALAFMSGA  240
PPAAAANPLD MVSTPHNMVK LTASCGTVGD MLLSGADRFG SPGADWSILD KLRASHQNLD  300
QLFHGKLGGT GTAVGVPHHY QQQQLMGMSA STLQRLPLHY LGCGTADDLK F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-50816415167NO APICAL MERISTEM PROTEIN
1ut4_B7e-50816415167NO APICAL MERISTEM PROTEIN
1ut7_A7e-50816415167NO APICAL MERISTEM PROTEIN
1ut7_B7e-50816415167NO APICAL MERISTEM PROTEIN
4dul_A7e-50816415167NAC domain-containing protein 19
4dul_B7e-50816415167NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG145800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9530451e-171EU953045.1 Zea mays clone 1377565 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827212.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-105NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A2S3GN970.0A0A2S3GN97_9POAL; Uncharacterized protein
STRINGPavir.Aa02770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-87NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]