PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG137200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 428aa    MW: 46670.5 Da    PI: 6.8337
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG137200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.68.1e-1671110140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC+++++ Cs++C+C dCkN e
  Pavir.1NG137200.3.p  71 KHNKGCHCKKSGCLKKYCECYQSNVLCSKNCRCMDCKNFE 110
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011140.32126IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.4E-4122IPR005172CRC domain
PROSITE profilePS5163431.1491111IPR005172CRC domain
SMARTSM011147.8E-1871112IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.7E-1274109IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MYCECFQEQQ FCDGCNCSNC GNIVGNEKAR QEAINAIVQR NPLAFQPKIE NGPSTHNVRK  60
DNSGAVPLVP KHNKGCHCKK SGCLKKYCEC YQSNVLCSKN CRCMDCKNFE GSEERKALIQ  120
GDYASDGNQI QQAASVALSG TIGSSRYNCS PVRRKRSHED ALGPRINSEG SMPETHFLKD  180
NHADVSLHAP SSTGFDGHNA ANSQSKSYNP TYRSPLANTI HLSEVNDLVT QLVTVCRMAA  240
ATIDDNKVNG TTVKNQYHVN GGLNNGNCKQ QELKEASQMD ILRRGCSDQP NINEIDSHWS  300
DTAKDSRPAS PTTQALMCDE QGTTFGNDYR CSFPSVSCDQ DISEINAAQE NLVLTGLREY  360
LRVIITRGKI NEHKSSSEAA MESDGRQHHG AAPSIALREV GGNAPANCAE TPRTNQQSTQ  420
NDGSERQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-23112024132Protein lin-54 homolog
5fd3_B3e-23112024132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG137200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798802.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7F4B70.0A0A2T7F4B7_9POAL; Uncharacterized protein
TrEMBLA0A2T7F4C20.0A0A2T7F4C2_9POAL; Uncharacterized protein
STRINGPavir.Aa02659.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-81Tesmin/TSO1-like CXC domain-containing protein