PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG137200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 428aa MW: 46670.5 Da PI: 6.8337 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.6 | 8.1e-16 | 71 | 110 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC+++++ Cs++C+C dCkN e Pavir.1NG137200.2.p 71 KHNKGCHCKKSGCLKKYCECYQSNVLCSKNCRCMDCKNFE 110 589***********************************65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 0.32 | 1 | 26 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.4E-4 | 1 | 22 | IPR005172 | CRC domain |
PROSITE profile | PS51634 | 31.149 | 1 | 111 | IPR005172 | CRC domain |
SMART | SM01114 | 7.8E-18 | 71 | 112 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.7E-12 | 74 | 109 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MYCECFQEQQ FCDGCNCSNC GNIVGNEKAR QEAINAIVQR NPLAFQPKIE NGPSTHNVRK 60 DNSGAVPLVP KHNKGCHCKK SGCLKKYCEC YQSNVLCSKN CRCMDCKNFE GSEERKALIQ 120 GDYASDGNQI QQAASVALSG TIGSSRYNCS PVRRKRSHED ALGPRINSEG SMPETHFLKD 180 NHADVSLHAP SSTGFDGHNA ANSQSKSYNP TYRSPLANTI HLSEVNDLVT QLVTVCRMAA 240 ATIDDNKVNG TTVKNQYHVN GGLNNGNCKQ QELKEASQMD ILRRGCSDQP NINEIDSHWS 300 DTAKDSRPAS PTTQALMCDE QGTTFGNDYR CSFPSVSCDQ DISEINAAQE NLVLTGLREY 360 LRVIITRGKI NEHKSSSEAA MESDGRQHHG AAPSIALREV GGNAPANCAE TPRTNQQSTQ 420 NDGSERQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-23 | 1 | 120 | 24 | 132 | Protein lin-54 homolog |
5fd3_B | 3e-23 | 1 | 120 | 24 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG137200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798802.1 | 0.0 | protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A2T7F4B7 | 0.0 | A0A2T7F4B7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F4C2 | 0.0 | A0A2T7F4C2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa02659.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 7e-81 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG137200.2.p |