PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG137200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 506aa    MW: 55212.5 Da    PI: 7.9078
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG137200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR421.8e-1364101139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          k+kk+CnC++skClk+YCeCf+++++C+  C+C++C N 
  Pavir.1NG137200.1.p  64 KKKKHCNCRNSKCLKMYCECFQEQQFCDG-CNCSNCGNI 101
                          589**************************.******996 PP
2TCR49.31e-15149188140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeC+++++ Cs++C+C dCkN e
  Pavir.1NG137200.1.p 149 KHNKGCHCKKSGCLKKYCECYQSNVLCSKNCRCMDCKNFE 188
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.7E-1264104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.95765189IPR005172CRC domain
PfamPF036384.6E-1066100IPR005172CRC domain
SMARTSM011147.8E-18149190IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.1E-12152187IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEQEKNQQQQ QQPKPAVLAA AGEMKVPAVA PQQPKPAPPA MPVSRQWPMA FNPPSTEAKS  60
GTPKKKKHCN CRNSKCLKMY CECFQEQQFC DGCNCSNCGN IVGNEKARQE AINAIVQRNP  120
LAFQPKIENG PSTHNVRKDN SGAVPLVPKH NKGCHCKKSG CLKKYCECYQ SNVLCSKNCR  180
CMDCKNFEGS EERKALIQGD YASDGNQIQQ AASVALSGTI GSSRYNCSPV RRKRSHEDAL  240
GPRINSEGSM PETHFLKDNH ADVSLHAPSS TGFDGHNAAN SQSKSYNPTY RSPLANTIHL  300
SEVNDLVTQL VTVCRMAAAT IDDNKVNGTT VKNQYHVNGG LNNGNCKQQE LKEASQMDIL  360
RRGCSDQPNI NEIDSHWSDT AKDSRPASPT TQALMCDEQG TTFGNDYRCS FPSVSCDQDI  420
SEINAAQENL VLTGLREYLR VIITRGKINE HKSSSEAAME SDGRQHHGAA PSIALREVGG  480
NAPANCAETP RTNQQSTQND GSERQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-286619811132Protein lin-54 homolog
5fd3_B7e-286619811132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG137200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798802.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T7F4C20.0A0A2T7F4C2_9POAL; Uncharacterized protein
STRINGPavir.Ab00979.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-93Tesmin/TSO1-like CXC domain-containing protein