PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG131300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | G2-like | ||||||||
Protein Properties | Length: 563aa MW: 62373.5 Da PI: 7.0049 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.7 | 1.9e-31 | 232 | 285 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ Pavir.1NG131300.1.p 232 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 285 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-29 | 228 | 286 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.601 | 228 | 288 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.73E-14 | 231 | 286 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-22 | 232 | 287 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 233 | 284 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MCVALALVLL TKHKELKEST DDAHIISLIQ RSKPVNVEGR DLSNSPLFYS HITSLLMLLA 60 RPSTFFISLL PFSLHLRRPP PLLPAPTFTY YSDDDRIQPW RDRERPIVEQ YKMVAREEQV 120 MRELKDKGVL VEILDGDEER STDNKLLDLN EGFDDAESEE GEAGDDEEDE GEEGDDGGST 180 TDVGGSGSSS NNSSTNNNSE SKKGDNKGGS KSEGSGEQRV PTVRQYSRSK LPRLRWTPDL 240 HMAFVHAVER LGGQERATPK LVLQMMNVRG LSIAHVKSHL QMYRSKKLDQ DGRPRGAISS 300 VYSPMDFHFM RGDRRFHEMS FFQRAAALSS SKPEHGSFFA SSRNCSAPEL SRLYGLLQHL 360 PAPQTFDFRN SRNHERASSQ REAPTVLSRK DVTPPSTTAP HQAHPLAAPA ALRSERRWWP 420 FTEAGAAAAT GERRAVETGR EVDFANSIGS SSRRPHYLWG VSVPGDPRLP FRWRPGGGSS 480 GGRDAAVGYP SNITKITTRS SDPVVIDEAL DAQQLERPKH VEPTRDSAMA AYEACRRKRS 540 PPVEAAQDDG AADLQLSLSP PR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-18 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-18 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-18 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-18 | 233 | 287 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG131300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824409.1 | 0.0 | uncharacterized protein LOC112899951 isoform X1 | ||||
TrEMBL | A0A2S3GN02 | 0.0 | A0A2S3GN02_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa02813.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2754 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 4e-33 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG131300.1.p |