PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG129200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 271aa    MW: 30693.7 Da    PI: 9.1092
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG129200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.13.1e-083495756
                         --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         f +e++e++e+  +  +n+ p++ +  eLA+k            ++ +qV++WF+NrR+  +
  Pavir.1NG129200.1.p 34 FLPEEVEQMEARLQplSNPSPDRVALVELARKFsasterigkvVIQPKQVRTWFCNRRYYSR 95
                         668889999999996569***********************999**************8665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002927101IPR001356Homeobox domain
SuperFamilySSF466891.63E-83396IPR009057Homeodomain-like
CDDcd000861.32E-53395No hitNo description
PROSITE profilePS500719.8633397IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-63392IPR009057Homeodomain-like
PfamPF000469.3E-63495IPR001356Homeobox domain
PfamPF167192.2E-28140267IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSSISCSRDL HRRGMGRPPS ARSDGVLAAA PFRFLPEEVE QMEARLQPLS NPSPDRVALV  60
ELARKFSAST ERIGKVVIQP KQVRTWFCNR RYYSREGKAA RAAQAQGNLA ARTNRQLAAG  120
SSAAVHAGSS SGKNYMEGSQ IKYEAKSNRD GAWYDVDVIS FRRSELGELE AMVQFPRFGA  180
EQAEWVNART CLRQRSLPLR ATECVLVHCW DLVLCYKESE QSTGLYFDAR VHGREIKSHD  240
SRECDCRFLV RYEHDQSEEI VYLRNLCRRP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A9e-301392702133SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B9e-301392702133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG129200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.12e-81protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.12e-81protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.12e-81protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.12e-81protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2S3GN361e-155A0A2S3GN36_9POAL; Uncharacterized protein
STRINGPavir.Ab00825.1.p1e-145(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-57sequence-specific DNA binding transcription factors;sequence-specific DNA binding