PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG128300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 21688.4 Da PI: 11.1205 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.5 | 4.7e-08 | 31 | 90 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C............TTS-.STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as.........kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s ++++ ++ + Le+A YI++ Pavir.1NG128300.1.p 31 RKTVERNRRNQMNALYSRLDQLVRAgSSpssapqaavLQRGPPaMTRPDRLEEAAAYIRQ 90 5789*********************766*********8888888**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101447 | 1.07E-5 | 6 | 16 | No hit | No description |
PROSITE profile | PS50888 | 8.619 | 26 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.36E-7 | 31 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-8 | 31 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-5 | 32 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDMPPPPPPP PPPPPPPHFG GPAAGGGRPD RKTVERNRRN QMNALYSRLD QLVRAGSSPS 60 SAPQAAVLQR GPPAMTRPDR LEEAAAYIRQ TTERVERLKE RKRELTAARA SSSSSQGSSS 120 AGGTAEVEVQ HLGSGLHAIL VTGAPPSDGA SFHRAVRAVE EAGGKVQNAH FSVVGARAVY 180 TIHTLVAEGG IERVVQRLKA ALRGDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG128300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798292.1 | 2e-98 | transcription factor bHLH162-like isoform X1 | ||||
TrEMBL | A0A3L6QID1 | 3e-98 | A0A3L6QID1_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa02869.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG128300.1.p |