PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG122400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HB-other | ||||||||
Protein Properties | Length: 123aa MW: 13322.1 Da PI: 11.9171 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.7 | 1.9e-08 | 22 | 81 | 9 | 56 |
HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +e++e+ e+ + +n+ p++ + eLA+k ++ +qV++WF+NrR+ + Pavir.1NG122400.1.p 22 PEEVEQIEARLQplRNPSPDRVALVELARKFsasterigkvVIQPKQVRTWFCNRRYYSR 81 66677777777754699999999****************999**************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0056 | 13 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.52E-6 | 19 | 81 | No hit | No description |
PROSITE profile | PS50071 | 9.831 | 19 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.13E-9 | 20 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-6 | 21 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-7 | 22 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MARPPSARSD GVLAAAPFRF LPEEVEQIEA RLQPLRNPSP DRVALVELAR KFSASTERIG 60 KVVIQPKQVR TWFCNRRYYS REGKAARAAQ AQRNLAARTH RQLAAGSSAA VHAGSSSGGG 120 HF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG122400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956551.1 | 1e-21 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680276.1 | 1e-21 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680277.1 | 1e-21 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680278.1 | 1e-21 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A3L6QJ93 | 4e-63 | A0A3L6QJ93_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J12414.1.p | 3e-76 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 4e-13 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG122400.1.p |