PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG116900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 342aa    MW: 37029.3 Da    PI: 9.467
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG116900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17183216134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Pavir.1NG116900.1.p 183 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 216
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13175216No hitNo description
SMARTSM004012.3E-18177229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-14181216IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268181213IPR000679Zinc finger, GATA-type
CDDcd002022.79E-13182212No hitNo description
PROSITE patternPS003440183208IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15183216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLMEREQD QGLFPAFHVT KDPPILFPFM INNPVDQLQG QSSYGDQRLR  60
HQVLAESTHQ QFTDRMMMMS GGSDVFPRPS PFRPTIQSID GDMIQRSAYD PYDIENKRAV  120
DGSISGWAAA AAPPAKMKIM RKAMASEYPE GGAARKPRRR AQAHQDESQQ LQQQAAMGVV  180
RVCSDCNTTK TPLWRSGPCG PKSLCNACGI RQRKARRAMA AAAGASNGGA PQVASVAAQA  240
KPASKKEKRA DVDQSLPFKK RCKMVAVDHA VTAAKETPTV AAPSNRDQDL DHVSSDKVVS  300
LQSKVVATPD PPAMSFHAFP ADEITDAAML LMTLSCGLVR S*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG116900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.10.0putative GATA transcription factor 22
SwissprotQ6YW481e-121CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2T7F3S60.0A0A2T7F3S6_9POAL; Uncharacterized protein
STRINGPavir.Aa02907.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-18GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]