PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG116500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 531aa MW: 56470.6 Da PI: 7.8912 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.7 | 1.6e-11 | 309 | 352 | 4 | 52 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +h + ErrRR+r+N++fe Lr llP+ K +Ka++L k+ +Y++ Pavir.1NG116500.1.p 309 NHMISERRRRERLNESFEALRGLLPPG-----SKKDKATVLAKTLDYMN 352 78999********************95.....599************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.567 | 305 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-16 | 307 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-15 | 308 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-9 | 309 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-12 | 311 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.78E-5 | 320 | 359 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MVSLIQPWRD SVCRCVPGWA YKDGRAFMEL PAHGLATSAS LPAQQQFYQM AAFMGCESGE 60 IEVGMSTAAS GSPMSLESSL HQVFSEDFFQ QSLLEEMLQL PPTGPSSPSS SLPSVSVGSP 120 AAEGSTSLPR TIAVTPAATP SSGSERQVVP VPVPPHPLHP RPPLASPFGR HGRVHFPSAD 180 ADDAAMAEAM LAVISASSSS ALPTTPSKST AAPPPGNHHH QHHSARRWPR RRGTTATAFR 240 AYNAALAPRA PWRPPGAPGQ RMIKMGISIL RRMHMLRFSR ERAGSTAMAQ RSQEEEEDQP 300 PAPTSSQLNH MISERRRRER LNESFEALRG LLPPGSKKDK ATVLAKTLDY MNILVAQIAD 360 LEARNRSLES RAHHQHSNGG CGCKERPAYS STELQEVVVL QGLSGASERV HVHVTAAGAS 420 TPSSSSAAAG RREVTVRVEA RAAHGDVAEL VARVLAVIKE MGCFTVVAVD GRRPGDGIAH 480 ATFTLRATSS NMDADSNLCC VQAGEFDEAS LRGAVMKAAE DSAPPPPSDD * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 313 | 318 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG116500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792423.1 | 0.0 | putative transcription factor bHLH041 isoform X2 | ||||
TrEMBL | A0A2T7F3R8 | 0.0 | A0A2T7F3R8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J40109.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG116500.1.p |