PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG105900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 413aa    MW: 43343.1 Da    PI: 9.18
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG105900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31241296156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pavir.1NG105900.1.p 241 KPRRCWAPELHRRFLQALRQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 296
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.545238298IPR017930Myb domain
SuperFamilySSF466893.94E-17239299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28240299IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-26241296IPR006447Myb domain, plants
PfamPF002492.5E-6243294IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDPPPRSERR RRREYLLALE EERRKIQVFQ RELPLCLELV TQTIEGMRSQ VDGGGGGGSE  60
ETVSDHGPVL EELMPLKPSL SLSSEEHESG AGAGKGEEAA ETPPPPEARK QQATPDWLRS  120
VQLWSQEPEQ RPSSPSSPRK EPLCKPVALS ARKAGGAFQP FERQKRAEAP ASSTTTAAAS  180
SAAAVVGDSS DGAPADTDAA ERRPRSDDKE TSGDAKDKGS GKKGSKGGEE GQSQAQAPAR  240
KPRRCWAPEL HRRFLQALRQ LGGSHVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP  300
NATATVQSTG ISASAAPAPP VPQFIVVGGI WVPPPEYAAA AAAQPAGGDA SGMTTTTTAG  360
TVYAPVATLP SGVQRAPQGP PRKSSGCSDG RRSGDASSGS PAVSSSSHTT SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-14241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-14241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-14241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-14241294154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13241294255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713ERRRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG105900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818344.10.0transcription factor NIGT1-like
SwissprotQ6Z8691e-124NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A2T7F3E60.0A0A2T7F3E6_9POAL; Uncharacterized protein
STRINGPavir.Aa02952.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.12e-39G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]