PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG088700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 438aa    MW: 47560.5 Da    PI: 7.2615
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG088700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11117155341
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 
                          + k  rr+++NReAAr+sR+RKka+i++Le+    L++ 
  Pavir.1NG088700.1.p 117 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQL 155
                          67999*************************865555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.4E-8113161No hitNo description
SMARTSM003386.4E-4115168IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.979117161IPR004827Basic-leucine zipper domain
PfamPF001701.8E-8118156IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-6119161No hitNo description
PROSITE patternPS000360122137IPR004827Basic-leucine zipper domain
PfamPF141442.1E-26203283IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGDRPWQQQP HEQASYPHAG MVQAASSSAH GGIIRKEGGG GYDDMAEFDQ ALFLYLNSQD  60
QTSAIQDQPQ TLNIFPSQPM HVVEPALPKR EAGSSGGAMG SGTPSTSKQQ EGPRTPDAKT  120
LRRLAQNREA ARKSRLRKKA YIQNLETSRI RLSQLEQELH RSRTQEAVFG GGVLPGGNGG  180
LSPEAAWFDV EHARWQEEHG KMMRHLRAAL EAEEHAHAAA PAADAQLRQM VDAAAAHHGV  240
LAELKAAVAW ADAFHLVSGA WASAAERCFL WIGGFRPSEL IKVAVRHAEP LTEPQAMGVC  300
GVQQWARDAE AALDHELQVM HRSVSEAVSS DAAALLCPYS DVPGYMATMS LAIGKLASLE  360
AFVRQADALR LQALHRLPQI LTARQSARCF LAIADYSHRL RALSELWHTR PRHEPPANTP  420
PAGSSHGQLH QSRDGLV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG088700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951577.10.0transcription factor TGAL9 isoform X2
SwissprotQ52MZ21e-134TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A368PHI60.0A0A368PHI6_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.13e-98bZIP family protein