PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG073400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 393aa    MW: 39851.6 Da    PI: 6.4982
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG073400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-085499342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                          ++C+ +e+ ++   C+ +   lC+ C   +H        H++vp+
  Pavir.1NG073400.1.p 54 VWVCEVCERAPAAVTCRADAAALCAACDADIHDAnplarrHERVPV 99
                         689*****************************44788888999986 PP
2CCT67.82.8e-23295338144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+l+RY+eKrk+R+FeK+irY+sRKa+AesRpR KGrF+k+a
  Pavir.1NG073400.1.p 295 REARLMRYREKRKNRRFEKTIRYASRKAYAESRPRFKGRFAKRA 338
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0291256IPR000315B-box-type zinc finger
CDDcd000215.52E-41656No hitNo description
PROSITE profilePS5011910.8655299IPR000315B-box-type zinc finger
PfamPF006438.5E-65399IPR000315B-box-type zinc finger
SMARTSM003367.9E-95799IPR000315B-box-type zinc finger
PfamPF062034.6E-17295337IPR010402CCT domain
PROSITE profilePS5101716.668295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAGLAAGYW GVGRLRCGAC GGSPAAVHCR TCPGGAYLCA GCDAGHARAG HERVWVCEVC  60
ERAPAAVTCR ADAAALCAAC DADIHDANPL ARRHERVPVQ PIGAAAPAAD PLLFGFGAAA  120
AEEKDDAAAA AGMLAGGAIG GGANSKVDGK LDFLFADVMD PFLGQDFARF PLADSVVPNH  180
GSCGGALDID FGGAAAAAVA AKPSYSSYTA ASLGNSGSSS EVGLVPDAIC GRGGSVTGGV  240
IELDFAQSKA AYLPYAATPT HSVSSLDAGA TPDRSDGGVM AGRVAATAPA AVESREARLM  300
RYREKRKNRR FEKTIRYASR KAYAESRPRF KGRFAKRADD NDADADADAE AAGFPTAAAA  360
APPPKQPQAP QPAAYHPYVL DFAAGYGVVP TF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41834e-34callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG073400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096304e-49AK109630.1 Oryza sativa Japonica Group cDNA clone:002-138-D02, full insert sequence.
GenBankAP0048384e-49AP004838.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0504A05.
GenBankAP0149584e-49AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-49CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818683.11e-173zinc finger protein CONSTANS-like
TrEMBLA0A3L6QHQ50.0A0A3L6QHQ5_PANMI; Zinc finger protein CONSTANS-LIKE 5-like
STRINGPavir.Aa03360.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.19e-18CONSTANS-like 5