PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG069400.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 390aa MW: 41400.4 Da PI: 4.3117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG069400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	86	162	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekk 70 +Wt e+laL++ + +++ +r+ + ++ v++++ r+rg +r + +C+ +we l +y ++++e + Pavir.1NG069400.2.p 86 EWTPAETLALVAEVAAVDDGWSRSVSTFQKRTMVAEALaasegpaRRRGSKRAAAECRRRWEALVAEYGTVRRWEVR 162 5********************9999999999999999999*****************************9976 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDPTAADQPC VIQALRAHSN AVPPPPLVQA LPAHHSPPKT HPPPAAAASS PAGAKRRPMP 60 TPTPTPTPPG PAPPSPRRTR LGGAPEWTPA ETLALVAEVA AVDDGWSRSV STFQKRTMVA 120 EALAASEGPA RRRGSKRAAA ECRRRWEALV AEYGTVRRWE VRTGGRYLEM GAAARRKAGL 180 PVEFDVEVYG AMDALVRVEE ALLAGAAGGA GGGGGYEVEG LVGGGASVQV GEQDGGDDRE 240 VGEDDVQEDE TVEAVKEEEK EEEEEDDDDD NNEEQEEMQV DDGNPDASND LGHEMGTNSE 300 PDKGQNNAWD LAIKLQENAQ HIHTILNHET DEDAGQNHAH AGLVSPDAMA TTRQKADELI 360 KSLGGLVSYL NQFTELVKEN GFENFVGMT*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDPTAADQPC VIQALRAHSN AVPPPPLVQA LPAHHSPPKT HPPPAAAASS PAGAKRRPMP  60
TPTPTPTPPG PAPPSPRRTR LGGAPEWTPA ETLALVAEVA AVDDGWSRSV STFQKRTMVA  120
EALAASEGPA RRRGSKRAAA ECRRRWEALV AEYGTVRRWE VRTGGRYLEM GAAARRKAGL  180
PVEFDVEVYG AMDALVRVEE ALLAGAAGGA GGGGGYEVEG LVGGGASVQV GEQDGGDDRE  240
VGEDDVQEDE TVEAVKEEEK EEEEEDDDDD NNEEQEEMQV DDGNPDASND LGHEMGTNSE  300
PDKGQNNAWD LAIKLQENAQ HIHTILNHET DEDAGQNHAH AGLVSPDAMA TTRQKADELI  360
KSLGGLVSYL NQFTELVKEN GFENFVGMT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.17267	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG069400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034113	3e-62	BT034113.1 Zea mays full-length cDNA clone ZM_BFc0028J08 mRNA, complete cds.
GenBank	BT085710	3e-62	BT085710.1 Zea mays full-length cDNA clone ZM_BFc0050E20 mRNA, complete cds.
GenBank	EU969957	3e-62	EU969957.1 Zea mays clone 337834 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701598.1	1e-176	trihelix transcription factor ASR3
TrEMBL	A0A368PHJ7	1e-174	A0A368PHJ7_SETIT; Uncharacterized protein
STRING	Pavir.J38222.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.1NG069400.2.p