PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG065700.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YC | ||||||||
Protein Properties | Length: 261aa MW: 29147 Da PI: 4.8154 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176.3 | 3.1e-55 | 81 | 185 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtd Pavir.1NG065700.3.p 81 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTD 170 89******988889**************************************************************************** PP NF-YC 88 ifdflvdivprdelk 102 i+dflvdi+prde+k Pavir.1NG065700.3.p 171 IYDFLVDIIPRDEMK 185 ************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.69E-33 | 61 | 175 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.2E-37 | 95 | 167 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.1E-21 | 103 | 166 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEPSSQPQPV MGVATAGSQA YPAAAAYAPP AMVPGAPAVV PPGSQPAAPF PNPAQLSAQH 60 QMVYQQAQQF HQQLQQQQQQ QLREFWTTQM DEIEQTTDFK NHTLPLARIK KIMKADEDVR 120 MISAEAPVVF AKACEVFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIIP 180 RDEMKEEGLG LQRVGLPPAV GAPTDSYPPY YYMTAQQMPP GGGMIYGDQQ GHPVTYMWQQ 240 PQGQDEEPPE EQRQQRSTLK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-59 | 88 | 181 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 159 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1425 | 0.0 | callus| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG065700.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP100104 | 0.0 | FP100104.1 Phyllostachys edulis cDNA clone: bphylf054d17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818162.1 | 1e-147 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_025818170.1 | 1e-147 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_025818176.1 | 1e-147 | nuclear transcription factor Y subunit C-4-like | ||||
Refseq | XP_025818183.1 | 1e-147 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q655V5 | 1e-118 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2S3GLP4 | 1e-145 | A0A2S3GLP4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7F2F7 | 1e-145 | A0A2T7F2F7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A3L6RUR7 | 1e-143 | A0A3L6RUR7_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa03384.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 3e-75 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG065700.3.p |
Publications ? help Back to Top | |||
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