PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG060500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 837aa MW: 92295.6 Da PI: 6.0861 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae+ +++++ +++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Pavir.1NG060500.2.p 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfNQQPP-TQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 154 99*****************************844443.459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +l+++++r+ Pavir.1NG060500.2.p 155 -WNDSNQLLLGIRRA 168 .7878889****997 PP | |||||||
2 | Auxin_resp | 119.2 | 3.3e-39 | 193 | 276 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k Pavir.1NG060500.2.p 193 AAHAASTNSRFTIFYNPRASPCEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 276 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.18E-48 | 52 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-43 | 58 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-22 | 66 | 167 | No hit | No description |
Pfam | PF02362 | 3.2E-23 | 67 | 168 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-25 | 67 | 169 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.253 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.3E-34 | 193 | 276 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.2E-8 | 694 | 780 | No hit | No description |
Pfam | PF02309 | 1.1E-7 | 696 | 789 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.028 | 704 | 788 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 837 aa Download sequence Send to blast |
MESQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGSAS 60 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFNQ QPPTQELIAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDSNQ LLLGIRRANR PQTVMPSSVL 180 SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPCEFVIPL SKYVKAVYHT RISVGMRFRM 240 LFETEESSVR RYMGTITGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT 300 TLPMYPSPFA LGLKRPWHTG LPSLYGGRDD GLTSSLMWLR DGANPSFQSL NFGGLGTSPW 360 MQPRMDNSLL GLQSDMYQTI AAAALQGTTK QIPPSVMQFQ QPQNIVGRSA LLSNQIMQQV 420 QPQFQQIYSQ NINDNTVQGH THAEYLQHQL QRSQSFNEQK PQLHPQQQHQ ESQQQQECKQ 480 TPQNQQLHCL PNALSAFSQL SSGTQSPSST LPTVPAFSNQ NFPDTNVSSL APYGGSSMQG 540 MLGQLPSEAA SNLPCVARTT PLPISDPWSS KRVAVESVNP SRPHAVSTQI EQLDMTPCNL 600 PQNSALAPLP GRGCLVDQDG SSDPQNHLLF GVNIDSQSLL MQGGIPGHQN DNVSSTIPYS 660 TSNFPSPSQD DFPLNQPLPS AGCLDESGYV PCAENSEQAN QQFSTFVKVY KSGTVGRLLD 720 ITRFSSYDEL RSEVGRLFGL EGQLEDPLRS GWQLVFVDGE DDVLLVGDDP WQEFVNSVSC 780 IKILSPEEVQ QMGKQGIQLL SSAPARRISN GCDSYVSRQE SRSLSTGMAP VGSVEF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-137 | 3 | 297 | 94 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pvr.12710 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG060500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823935.1 | 0.0 | auxin response factor 6-like isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A2S3GLJ5 | 0.0 | A0A2S3GLJ5_9POAL; Auxin response factor | ||||
STRING | Pavir.Aa03303.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG060500.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|