PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG050500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 550aa MW: 58225.7 Da PI: 4.3168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6.1e-13 | 295 | 338 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ +Lr+l+P+ +K++ a+iL A++YI Lq Pavir.1NG050500.1.p 295 VAERRRRKKLNDRLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 338 58*********************7.....7***************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.77E-18 | 286 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.974 | 288 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-16 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 295 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 295 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.88E-13 | 295 | 342 | No hit | No description |
CDD | cd04873 | 0.00209 | 422 | 486 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 550 aa Download sequence Send to blast |
MEGGDHRCMA AAAGDGGASV ESALRPLVGA DAWDYCIYWR LSPDQRFLEM TGFCCSSEFE 60 AQISALGELP SSIPLDSSSA GMHAEAMLSN QPIWQTSCVS ELPASYSSEH ASGGPRTRLL 120 VPVAGGLVEL FAARYMAEEE QMAELVMAQC GVPARAGDGE GNEGGVVHSW PEAPGFAWDG 180 AAADPQRMYA AVPSLNLFDA AGDVAADSFL AAAPGVVDDA AAAGWQYAAA AGSEPSVVAV 240 QQEQPQQLHG AAARAGGADS GSEGSDIQGD PEDDGDGDAQ GRGGGGKRQQ CKNLVAERRR 300 RKKLNDRLYK LRSLVPNITK MDRASILGDA IDYIVGLQNQ VKALQDELED PADGVPDVLL 360 DHPPPASLVG LENDDSPRTS LHQPAAPLAG NKRPRAAAEE DKGHDMEPQV EVRQVEANEF 420 FLQVLCEHKP GRFVRLMDAV NALGLEVTNV NVTSYKTLVL NVFRVVRRDN EVSVQADRVR 480 DSLLEVTRES YGVWSSAPPV GSGGADAKLE GVDVKLEGVD VKLDGVDAQA QAAVEDHYGS 540 YNHLLQYLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 296 | 303 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development. Promotes tapetal PCD. Positively regulates the expression of two tapetum-specific genes, the cysteine protease CP1 and the lipid-transfer protein C6 (PubMed:17138695). Acts upstream from and interacts with EAT1/DTD in the regulation of tapetal PCD (PubMed:23385589). Regulates the expression of genes related to aliphatic metabolism during pollen development. May play regulatory role in the lipidic metabolism involved in the formation of pollen wall (PubMed:19825565). {ECO:0000269|PubMed:17138695, ECO:0000269|PubMed:19825565, ECO:0000269|PubMed:23385589}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG050500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034326 | 0.0 | BT034326.1 Zea mays full-length cDNA clone ZM_BFc0007A07 mRNA, complete cds. | |||
GenBank | BT042791 | 0.0 | BT042791.1 Zea mays full-length cDNA clone ZM_BFc0041J08 mRNA, complete cds. | |||
GenBank | BT063010 | 0.0 | BT063010.2 Zea mays full-length cDNA clone ZM_BFc0017C04 mRNA, complete cds. | |||
GenBank | BT063118 | 0.0 | BT063118.1 Zea mays full-length cDNA clone ZM_BFc0027J15 mRNA, complete cds. | |||
GenBank | BT065717 | 0.0 | BT065717.1 Zea mays full-length cDNA clone ZM_BFc0042K04 mRNA, complete cds. | |||
GenBank | BT067785 | 0.0 | BT067785.1 Zea mays full-length cDNA clone ZM_BFc0159F07 mRNA, complete cds. | |||
GenBank | BT068836 | 0.0 | BT068836.1 Zea mays full-length cDNA clone ZM_BFc0079O03 mRNA, complete cds. | |||
GenBank | BT088090 | 0.0 | BT088090.1 Zea mays full-length cDNA clone ZM_BFc0009P17 mRNA, complete cds. | |||
GenBank | BT088299 | 0.0 | BT088299.1 Zea mays full-length cDNA clone ZM_BFc0123M15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825508.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825517.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825524.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825535.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825544.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825551.1 | 0.0 | transcription factor TDR-like | ||||
Refseq | XP_025825560.1 | 0.0 | transcription factor TDR-like | ||||
Swissprot | Q6YUS3 | 0.0 | TDR_ORYSJ; Transcription factor TDR | ||||
TrEMBL | A0A3L6QCU4 | 0.0 | A0A3L6QCU4_PANMI; Transcription factor ABORTED MICROSPORES-like isoform X2 | ||||
STRING | Pavir.Ab00204.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5530 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 5e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG050500.1.p |