PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG039900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 353aa    MW: 37428.6 Da    PI: 4.961
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG039900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21248310163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  Pavir.1NG039900.1.p 248 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAESLRSENSSLRAELERIRKEYEQLLSQN 310
                          89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-27195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.1E-21124230No hitNo description
Gene3DG3DSA:1.20.5.1706.0E-17245309No hitNo description
SMARTSM003387.2E-21248312IPR004827Basic-leucine zipper domain
PfamPF001706.8E-20248310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.288250313IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11251308No hitNo description
CDDcd147021.00E-25253303No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSNDPSTQA PKASEQDQPS ATTSGATASV YPEWPSFQAY SAIPPHGFFP PTVAANPQAH  60
PYMWGAQPMV PPYGTPPSPY VMYPPGTVYA HPSTPPGMHP FSHYPMPTNG HAETPGAAPS  120
ASEMNGKNDP GRMSAPSANG ITSHSESGSE SESEGSDANS QNDSHSKDND GKEDGSSQNS  180
ISYSASQGML NQTMPMIPIQ PGAMVGVPGS TANLNIGMDY WAAPGSATVP ATQGKATSGS  240
ARGDQWDERE LKKQKRKQSN RESARRSRLR KQAECEELGQ RAESLRSENS SLRAELERIR  300
KEYEQLLSQN ASLKEKLGAT SDSIPDMNEQ NDGGGSGYKQ QPDSDAQPGN ES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264270RRSRLRK
2264271RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.186130.0leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG039900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952026.10.0transcription factor HBP-1a
SwissprotP239221e-142HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLK3YTP10.0K3YTP1_SETIT; Uncharacterized protein
STRINGPavir.Aa03436.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.16e-84basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]