PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG039000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | BES1 | ||||||||
Protein Properties | Length: 585aa MW: 65480.9 Da PI: 5.3465 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 105.4 | 1.1e-32 | 1 | 115 | 29 | 134 |
DUF822 29 iyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.sslkssalaspvesysaspk 115 ++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +p+ + + g ++ as ++ ++l+s+a+ +p++s+++ ++ Pavir.1NG039000.1.p 1 MLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQPPplPPPPQLGMFQVASGDTPAFiNALNSYAIGTPLDSQASALQ 90 79********************************************99999999***************99******************* PP DUF822 116 sssfpspssldsislasa......a 134 +++++spsslds+ ++ + Pavir.1NG039000.1.p 91 TDDSLSPSSLDSVVAERSiktenfG 115 *************987665554442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.8E-31 | 1 | 125 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 1.6E-173 | 144 | 578 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 1.6E-170 | 145 | 578 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 1.4E-83 | 168 | 539 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 182 | 196 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 203 | 221 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 225 | 246 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 318 | 340 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 391 | 410 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 425 | 441 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 442 | 453 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 460 | 483 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.0E-54 | 498 | 520 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MLAGLRQHGN FPLPARADMN DVLAALARAA GWTVHPDGTT FRSSNQPPPL PPPPQLGMFQ 60 VASGDTPAFI NALNSYAIGT PLDSQASALQ TDDSLSPSSL DSVVAERSIK TENFGNSSSV 120 NSLNCMDNNQ LLRSSAMLAG DYTKTPYIPV YASLPMGIIN SHCQLVDPEG VRAELRHLKS 180 LNVDGVVVDC WWGIVEAWIP RKYEWSGYRD LFGIIKEFKL KVQVVLSFHG SGETGSGDVL 240 ISLPKWIMEI AKENQDIFFT DREGRRNTEC LSWGIDKERV LRGRTGIEVY FDFMRSFHTE 300 FRNLSEEGLI SAIEIGLGAS GELRYPSFPA RMGWKYPGIG EFQCYDRYMQ KNLRQSALSR 360 GHLFWARGPD NAGYYNSRPH ETGFFCDGGD YDSYYGRFFL NWYSGILIDH VDQVLSLAAL 420 AFDGAEIVVK IPSIYWWYRT ASHAAELTAG FYNPTNRDGY SPVLKMLKKH SIILKLVCYG 480 AEFTVQENDE AFADPEGLTW QVMNAAWDHG LPLCIESALP CLDGDMYSQI LDTAKPRNDP 540 DRHHASFFAY RQQPPFLLQR DACYPELRTF VKCMHGEAPQ NGED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-124 | 147 | 577 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG039000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811466.1 | 0.0 | beta-amylase 8 isoform X2 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | A0A2S3GL09 | 0.0 | A0A2S3GL09_9POAL; Beta-amylase | ||||
STRING | Pavir.Aa03184.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.2 | 0.0 | beta-amylase 2 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG039000.1.p |
Publications ? help Back to Top | |||
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