PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG038700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 485aa    MW: 52712.4 Da    PI: 7.6849
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG038700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.3e-0863104338
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                          +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  Pavir.1NG038700.1.p  63 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 104
                          578*****************************6566777776 PP
2CCT675.1e-23431474144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Pavir.1NG038700.1.p 431 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 474
                          9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6861108IPR000315B-box-type zinc finger
SMARTSM003363.3E-1161108IPR000315B-box-type zinc finger
CDDcd000211.14E-864108No hitNo description
PfamPF006431.5E-664105IPR000315B-box-type zinc finger
PfamPF062035.7E-18431473IPR010402CCT domain
PROSITE profilePS5101715.993431473IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MIFSCDFICH AAIPVTHAVG AHLLAFSWDR CCTGRNAAAR VGARRHMSGS KAAPGAAVGG  60
KAARACDSCL RRRARWYCAA DDAFLCQGCD ASVHSANPLA RRHERLRLRP TSPPRHAAST  120
SASASKTRQQ VTPGWSKRKA RTRRPNVKSV GQLLSRKLIV VPEVTVESSS DERKAEEEEA  180
EEEELLYRVP NFDRALAELC SPLPIDDPAA GAPCSREDVD GTVEHTKTPV VAESPVQQLP  240
DSFAGFGPTD AELREFAADM EALLGQGLDD GNELDESFYM ESLGLMAPAE DGGRVKMEPG  300
SSVISHIEGS LARGPAELKP EESAEVLDTD LHCSSPTVID HDEDSFERKA SASSGVAADA  360
QFLKRSLDLR LNYEAIIESW GSSPWTDGQR PNVQLDDFWP HAHHPGVWMA GGGRLGGEAL  420
TPRLGMMGGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRPAAAAAP  480
CAVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441457RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG038700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9567871e-175EU956787.1 Zea mays clone 1573947 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797872.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2T7FBW60.0A0A2T7FBW6_9POAL; Uncharacterized protein
STRINGSi017124m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.13e-71B-box type zinc finger protein with CCT domain