PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG030400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 511aa MW: 54173.9 Da PI: 6.1999 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.7 | 4.7e-28 | 269 | 318 | 2 | 51 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki++ Pavir.1NG030400.1.p 269 EKTVSLEVLQRYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKIAK 318 799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.757 | 255 | 339 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-24 | 271 | 318 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.6E-19 | 403 | 472 | No hit | No description |
SMART | SM00666 | 1.0E-18 | 405 | 498 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 18.634 | 405 | 498 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.3E-14 | 406 | 495 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.7E-23 | 406 | 473 | No hit | No description |
CDD | cd06407 | 1.54E-31 | 406 | 474 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 511 aa Download sequence Send to blast |
MSEVSDVLTT VGEAHRLPLA QAWVRCKRCN TSTEHASLTA AGTPFYLASD ADQSLIGFRE 60 ACVEHHLRAG RGGLVEEAAA ARGPLFCADV TKYSMDAYPL AHHARFCGLA GCLAVCVQLR 120 RDHDDDASMD DGSREQCVLE FFLPPDCRDG AAQKAAADAI AATLTQRFGN GHLKAIAISW 180 LQDLAFEIVA DGECVLRHDR VVMVDAPELE LNDHGGDERD SDEEGLHLAT AVGAADIETP 240 KMNDGGENGG EDPRSQAGEK KKKAKRKGEK TVSLEVLQRY FSGSLKDAAR SLGVCPTTMK 300 RICRQHGISR WPFRKIAKAN RSLDKIKRVF ESVPGSTNPM AAPTPAAAVS HQAPAAATAR 360 GGHALPCLSS ALRVTSSQGS CQAPPPPNPK DAALRTPLHG ADAGVVTVKA SYRGDIVRFR 420 VPSSAGVATV KGEVAKRLGL EASEFDVKYL DDDNEWVLLS CDADFQECLE VVPAVSGASS 480 SSGSASPQPV VRLMVQEVPE NHGSSCGSSD * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG030400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823617.1 | 0.0 | protein NLP3-like | ||||
TrEMBL | A0A2S3GLE7 | 0.0 | A0A2S3GLE7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa03213.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76350.1 | 9e-59 | Nin-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG030400.1.p |