PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG011300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 206aa MW: 22812.1 Da PI: 9.7455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 7.9e-12 | 39 | 86 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL +++ + ++ Kl+Ka iL A++ + +L Pavir.1NG011300.1.p 39 SKACREKMRRDRLNDRFLELSSVMNPG---KQAKLDKANILSDATRMLAQL 86 6789**********************9...9***************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-13 | 29 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.557 | 35 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.42E-8 | 38 | 91 | No hit | No description |
Pfam | PF00010 | 2.5E-9 | 39 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 40 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-8 | 41 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MSASSILGID GFSVDACGFE QSNLGKRPRD EPSSSGPKSK ACREKMRRDR LNDRFLELSS 60 VMNPGKQAKL DKANILSDAT RMLAQLRGEA EKLKESNEKL RENIKDLKEE KNELREEKVR 120 LKAEKERLEQ QVKAMSAPPT GYVSHVPHPA AYHPAAFAPF VPPQQAPTNK SAPIPAAFPG 180 MAMWQWLPPT VVDTTQDPKL WPPNA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.44816 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG011300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040920 | 0.0 | BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds. | |||
GenBank | EU965585 | 0.0 | EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021314883.1 | 1e-132 | transcription factor ILR3-like isoform X2 | ||||
Swissprot | Q9FH37 | 1e-59 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1E5VID6 | 1e-131 | A0A1E5VID6_9POAL; Transcription factor ILR3 | ||||
STRING | Pavir.Aa03509.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8173 | 36 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 2e-44 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG011300.1.p |