PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG557800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 138aa MW: 14463.2 Da PI: 5.9189 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.6 | 4.7e-07 | 97 | 117 | 5 | 25 |
CHHHCHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKk 25 ++ +r++kNRe+A rsR+RK+ Pavir.1KG557800.1.p 97 RKNIRMMKNRESALRSRARKR 117 6889****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-5 | 92 | 118 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MPRSPQLSLS GCSSLFSLSS TSTSRDNDSA AAEPVPPPPP SLHPLPPGRP LLSLSVGGGG 60 EEEQEDEEEY LLGGLDLQLT GAGGSNSSGC CDGDDERKNI RMMKNRESAL RSRARKRVGS 120 RILLKNSSSS LIPCLLK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10171 | 0.0 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG557800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812916.1 | 6e-26 | bZIP transcription factor 27-like | ||||
Refseq | XP_025812921.1 | 6e-26 | bZIP transcription factor 27-like | ||||
Refseq | XP_025812927.1 | 6e-26 | bZIP transcription factor 27-like | ||||
TrEMBL | A0A3L6RQA7 | 9e-38 | A0A3L6RQA7_PANMI; Protein FD-like | ||||
STRING | Pavir.J00689.1.p | 1e-76 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG557800.1.p |