PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG557700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 71aa MW: 8012.15 Da PI: 10.4626 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.5 | 2.4e-07 | 15 | 51 | 25 | 61 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 25 kaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +a+++eLe++v L +eN +Lk + ++lk e+a+l + Pavir.1KG557700.1.p 15 QAYVQELEKEVRRLVNENLKLKRQCKQLKMEMAALIQ 51 89*****************999999999999998855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.6E-7 | 15 | 51 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 71 aa Download sequence Send to blast |
MGQAHYSNSD LVQGQAYVQE LEKEVRRLVN ENLKLKRQCK QLKMEMAALI QPSSSRSNPH 60 IRRASSSTQL * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.10171 | 2e-90 | callus| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG557700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956324 | 2e-53 | EU956324.1 Zea mays clone 1560828 bZIP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812916.1 | 1e-27 | bZIP transcription factor 27-like | ||||
Refseq | XP_025812921.1 | 1e-27 | bZIP transcription factor 27-like | ||||
Refseq | XP_025812927.1 | 1e-27 | bZIP transcription factor 27-like | ||||
TrEMBL | A0A3L6QIU2 | 1e-26 | A0A3L6QIU2_PANMI; Protein FD-like | ||||
STRING | Pavir.Ab03353.1.p | 5e-44 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG557700.1.p |