PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG555300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 617aa    MW: 67857.7 Da    PI: 4.6954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG555300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-077799427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         ++C +f++ G C  GdrC F+Hgp
  Pavir.1KG555300.2.p 77 VPCYYFQK-GMCAKGDRCAFSHGP 99
                         69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.437113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0281541IPR000571Zinc finger, CCCH-type
SMARTSM003562.51740IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.03773100IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-67499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-57698IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-47899IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MQGSECEFRH SDAARMNPRD CWYWFNGNCA NPKCSFRHPP LDNLLGAPTT PRAPQQPAPQ  60
VSVPAQAHGS VLAKQGVPCY YFQKGMCAKG DRCAFSHGPQ PAGTPQPPPA AKIFTPALQP  120
NSQLKNSWTK PNSSGQQNMP AGIQDKSKLS IHDAKPVQKQ HVTSRVDHSS RTYQNHSNSY  180
AQSGTTKQPQ PSVQDGLSEN GMEAGEFLRE PSAGSGVLVA GVNDDSEQSF KGNRNSYHHH  240
TERSYRSSAE RLSSDKRISE REPMPAVIAG SSDLRHRLLK QRRLNNNLRS TEAPDMNDAC  300
LEGERNDQHR WRGEEHDRPL PRPRLRDRIR LPGATSFDRH GSCSEEWDRG PRGRLSPPKH  360
SDLRGKLHER LKVRSAEEIP VNSVKSSVAK ASNGEDAESL NFAGPKSLAE LKAKKGGGSS  420
SREEAIVKGV GLSRVTSGII SSREPAPFEG PKPLSAILKR KREVASEDAV AHFGSIQEED  480
NAAGVDEESQ ILADDMVEEN MEGNTAAEEG EEEAFHPEDD VAYDDNADEA TGQELEEHQD  540
VEIAGEDYDY EAADTNADAG QELEEHQDVE AAAEDYDYEA ADVNAEEDNE YQEYQDDDDD  600
LEDDDDFARK VGVMIS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.268760.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG555300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805705.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2T7FEB90.0A0A2T7FEB9_9POAL; Uncharacterized protein
STRINGPavir.Ab03367.1.p0.0(Panicum virgatum)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]