PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG552700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | TCP | ||||||||
Protein Properties | Length: 227aa MW: 22995.9 Da PI: 10.3648 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.4 | 6e-39 | 33 | 120 | 2 | 87 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 +++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+++ Pavir.1KG552700.1.p 33 TVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSQTTPT 120 689*************************************************************999998885555555555543222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-33 | 39 | 118 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 39 | 93 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTTRPAAEGG AAAAAAAAAA ADNKQLVPAS NGTVRKAPSK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ASFSTSSPSS LRSSSQTTPT 120 AAAPFILGKR ARDDAGADAE PTVAAPAPGF WALPGRADLG QLWSFAAAPE MMVAAAATPA 180 MAGEASAARV GNYLPMAQGN LNLLAYFSGG PAPTATAGRA EEESAR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6609 | 0.0 | callus| leaf| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG552700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 1e-111 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 1e-111 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 1e-111 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-111 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814152.1 | 1e-103 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-71 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2T7FE71 | 1e-103 | A0A2T7FE71_9POAL; Uncharacterized protein | ||||
STRING | Sb04g038140.1 | 3e-85 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-39 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG552700.1.p |