PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG536800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 295aa    MW: 32412.4 Da    PI: 6.9982
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG536800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.3e-51101411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                          lppGfrF P+deelv++yL+ kv+++++  +   + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd
  Pavir.1KG536800.1.p  10 LPPGFRFYPSDEELVCHYLHSKVANERIAGAGGaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKD 99 
                          79*************************8776555***************87788999********************************* PP

                  NAM  90 kevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +++    ++++vg++ktLvfy+grap+g kt+Wvmhe+r+
  Pavir.1KG536800.1.p 100 RVIHNPkaaGRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 141
                          ****987877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-607160IPR003441NAC domain
PROSITE profilePS5100557.71210160IPR003441NAC domain
PfamPF023658.3E-2811141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHS KVANERIAGA GGAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPKAAGR AVVGMRKTLV  120
FYRGRAPNGI KTSWVMHEFR MENPHTPPKE DWVLCRVFYK KKADAMDYAM DSEQDVAMPH  180
SADHPSYSPS FPALGSSHYH LPPPPPSDQH GGAGAGSLND FPAAMALLHH QHNSMFNFPA  240
QPHDGGNVGL APAAAAAGSR DGSGAGGDQC GSGVLMDIGL DEHYNYNYNS LMQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4711654169NO APICAL MERISTEM PROTEIN
1ut4_B1e-4711654169NO APICAL MERISTEM PROTEIN
1ut7_A1e-4711654169NO APICAL MERISTEM PROTEIN
1ut7_B1e-4711654169NO APICAL MERISTEM PROTEIN
3swm_A1e-4711657172NAC domain-containing protein 19
3swm_B1e-4711657172NAC domain-containing protein 19
3swm_C1e-4711657172NAC domain-containing protein 19
3swm_D1e-4711657172NAC domain-containing protein 19
3swp_A1e-4711657172NAC domain-containing protein 19
3swp_B1e-4711657172NAC domain-containing protein 19
3swp_C1e-4711657172NAC domain-containing protein 19
3swp_D1e-4711657172NAC domain-containing protein 19
4dul_A1e-4711654169NAC domain-containing protein 19
4dul_B1e-4711654169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.315990.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG536800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-150AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824302.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FLJ29e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A2S3GUT50.0A0A2S3GUT5_9POAL; Uncharacterized protein
STRINGPavir.J34679.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.18e-81NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]