PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG525100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 292aa    MW: 32001.3 Da    PI: 8.6489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG525100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-165096455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Pavir.1KG525100.1.p 50 VHNLSEKRRRSRINEKMKALQTLVPNS-----SKTDKASMLDDAIEYLKQLQ 96
                         6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-2043106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-2044106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0764695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-1649100No hitNo description
PfamPF000103.3E-145096IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-1952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDAQQLDLFL RRHQSMANVC CESEDALGSS ESEPARPARP RGKRSRAAEV HNLSEKRRRS  60
RINEKMKALQ TLVPNSSKTD KASMLDDAIE YLKQLQLQVQ MLSMRNGLYL PPANLSGVPE  120
VLATSEVCAT INQSGVKASD SGVALLPVNQ SSVAHHSFDP PNHDQRHNKS LVLQSIPTSS  180
TTIARFLQEP AQANLQSFQL AVPPEMILKE DMMLKHRLTS VQGTTSVPGH EVKLASQETC  240
TVNSGHFNRG SQRKEVARDM MPKNTESVLF MPYLHGLQSG DANGGLRAEP S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG525100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804956.10.0transcription factor EC-like isoform X1
TrEMBLA0A2T7FDG70.0A0A2T7FDG7_9POAL; Uncharacterized protein
TrEMBLA0A2T8KY920.0A0A2T8KY92_9POAL; Uncharacterized protein
STRINGPavir.J11618.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-35phytochrome interacting factor 3