PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG518900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 163aa    MW: 17436.7 Da    PI: 6.9098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG518900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17756255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f ta++Aa+a+++a++ + g
  Pavir.1KG518900.1.p  7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETADDAARAYDEAARIMCG 56
                         69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-28663No hitNo description
Gene3DG3DSA:3.30.730.103.9E-32764IPR001471AP2/ERF domain
PROSITE profilePS5103219.915764IPR001471AP2/ERF domain
PfamPF008472.9E-10755IPR001471AP2/ERF domain
SMARTSM003801.4E-35770IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-19764IPR016177DNA-binding domain
PRINTSPR003672.0E-10819IPR001471AP2/ERF domain
PRINTSPR003672.0E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA DDAARAYDEA ARIMCGPRAR  60
TNFAAGAGAG AGAAAPASFL SAALVEKLHR FNLASVQAAQ RQREAAASAA AASAAMPAAG  120
CDAWAACESS AAEWGGRFLE EQHVEQMIEE LLDANFSMEI CC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14670469ATERF1
3gcc_A1e-14670469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG518900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9681121e-104EU968112.1 Zea mays clone 314589 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797628.15e-81ethylene-responsive transcription factor ERF003
SwissprotQ94AW54e-53ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A3L6QIA12e-80A0A3L6QIA1_PANMI; Uncharacterized protein
STRINGPavir.J20772.1.p8e-82(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]