PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG516800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 403aa MW: 40169.6 Da PI: 5.4072 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.4e-12 | 206 | 251 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Pavir.1KG516800.1.p 206 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 251 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.42E-13 | 199 | 255 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-17 | 199 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 203 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-9 | 206 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MQPSGREMQG VGGGGQDDFF DQMLSTLPAA WSELGSGKSP WELPAAGASE DAAFDESALL 60 ASRLRHHQIG GGGVDKPVML HLSDLHGLAA GGEDGGAAGF LPLPLFTDRG REDMDAAFKS 120 PNAAGGDQAL YNGFGAAGMH GAAAVQPQFG QGGSVPAQSF GGGAAAGGGG SAPAGAPAAG 180 ASPGGGAAPP RQQRLRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML 240 DEIIDYVKFL QLQVKVLSMS RLGGAAGVGP LVANMSSEGN GNGNGMSDSG DGNGANGGGN 300 GENGGGSLKV TEQQVARLME EDMGTAMQYL QGKGLCLMPI SLASAISSAT SSSLLSRPSI 360 GSMGSARGPA HEGGNPASPP LMNGAGGDDS RTVKDAGAGS KQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | RLRRER |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.29705 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in trichomes of the root maturation zone. Detected constitutively in flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:16581911}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG516800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809006.1 | 0.0 | transcription factor bHLH82-like | ||||
Swissprot | Q9LSQ3 | 3e-74 | BH082_ARATH; Transcription factor bHLH82 | ||||
TrEMBL | A0A2S3GUI2 | 0.0 | A0A2S3GUI2_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FD95 | 0.0 | A0A2T7FD95_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03158.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1419 | 37 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-34 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG516800.1.p |
Publications ? help Back to Top | |||
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