PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG515300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 219aa    MW: 23300.9 Da    PI: 4.7542
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG515300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.3e-161464155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++kGVr +k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Pavir.1KG515300.1.p 14 KKFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 64
                         59*****999.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-251477No hitNo description
PROSITE profilePS5103221.0741575IPR001471AP2/ERF domain
SMARTSM003801.5E-281581IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-261577IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-171577IPR016177DNA-binding domain
PfamPF008471.3E-81563IPR001471AP2/ERF domain
PRINTSPR003672.6E-81627IPR001471AP2/ERF domain
PRINTSPR003672.6E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSSSSPEMEG TSSKKFKGVR KRKWGKWVSE IRLPNSRERI WLGSYDAPEK AARAFDAAFV  60
CLRGAGAAGA DLNFPDSPPP CRVGGCSSDP QEVQAAALSH ANRAAVTAQQ AAAALMDVDD  120
GSMLPWGSVA QHDMAGVLGT GSADEVVAPV HADGSIDWRP FMAHPPPLFS PTGWGNNAYD  180
FLQELPPPGA ADEDMEDSIH GATASLWSFD SRDSYFRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG515300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794487.11e-140ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC29e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A3L6RWH11e-139A0A3L6RWH1_PANMI; Uncharacterized protein
STRINGPavir.J00593.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]