PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG511200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 306aa    MW: 34137.3 Da    PI: 6.412
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG511200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP54.61.8e-17118193171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                          rkeksL+l tq+f+kl+ + e ++v+l+e+ak L+ e  ++ + R Y  +NVL++lnliek     ++k+++rw g
  Pavir.1KG511200.1.p 118 RKEKSLGLRTQNFVKLFLTMEVNTVSLDEAAKLLLGEGHEETNMRSYTTTNVLSSLNLIEKiqqgdSRKPAFRWLG 193
                          79***********************************999999**********************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-16115194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.4E-18118193IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.1E-12119193IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.26E-5120194IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTGLFKFNGV GTLWLPGNDE VMAKEILVRK AENRYTWIGF DGVPMALREL KERALREKSG  60
LAPLQTDQQS ASTMSDDEDD DKLGNPDGDI ENEKLSQTVD NPFDKPGAPR CRLRSDHRKE  120
KSLGLRTQNF VKLFLTMEVN TVSLDEAAKL LLGEGHEETN MRSYTTTNVL SSLNLIEKIQ  180
QGDSRKPAFR WLGRAAIPNA ENAVTVALCR VGLGQGKKSG FVYGPFHPAG ARKHELDGGN  240
KPGPRERAED WESLSAAFRP QYQNQALGDL FAHYVEAWKT WYSELAQGSN IMQQHFDQSA  300
VNHFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG511200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795108.11e-180E2F transcription factor-like E2FE
TrEMBLA0A2S3GT591e-179A0A2S3GT59_9POAL; Uncharacterized protein
STRINGPavir.Ab02967.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-43DP-E2F-like 1