PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG509000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 171aa MW: 19762.8 Da PI: 9.7966 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 48 | 97 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ke+++e +s+yFs+pik+AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl Pavir.1KG509000.1.p 48 KELTFELVSRYFSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL 97 89**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.622 | 27 | 117 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.8E-23 | 50 | 97 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MFLLYPVNAE ALGCPSEVDF ASFWALVEEE ENARRKSEGG PRSGPGRKEL TFELVSRYFS 60 MPIKQAAREL NVGLTVLKKR CRELGIPRWP HRKVKSLQTL IDNVQELGKP TAQEDGHLTR 120 SLVERLQRTK KLIEERPEVL LDEETKELRQ ACFKEAFKRR RLLLTHGTYW * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 161 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG509000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822796.1 | 6e-96 | protein RKD1 | ||||
Swissprot | Q9M9U9 | 8e-38 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | A0A2S3GTB4 | 1e-94 | A0A2S3GTB4_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FBK3 | 1e-94 | A0A2T7FBK3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02992.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 3e-40 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG509000.1.p |