PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG497700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44439.7 Da PI: 5.0496 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.6 | 9.1e-31 | 46 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 lp+G++F+P+d+el+++ L+k kv k++++ + i+++d ++ ++P++Lp vk++ + +fF+++ k+y+tg++k+r+++ Pavir.1KG497700.2.p 46 LPKGVKFDPSDQELLWHLLAKigKVGVKPHPFIDEfIPTIDsnegLCCTHPQKLP-GVKQDGSVSHFFHRTFKAYTTGTKKRRKINtdel 134 799************8888763345666655533236655544559*********.677888899******************7544566 PP NAM 80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v+ +g++ g+kk++v y + + k ekt+Wvmh+y++ Pavir.1KG497700.2.p 135 gEVRWNKTGKTKAVVI-GGTHLGCKKIMVMYasNVKGGKQEKTNWVMHQYHV 185 6899************.999***********6544667778*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-35 | 31 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.301 | 46 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-13 | 47 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MASKIKNASA PTHHTTHTWK SNPTKECPKC NYIIDNSDVV DEWPGLPKGV KFDPSDQELL 60 WHLLAKIGKV GVKPHPFIDE FIPTIDSNEG LCCTHPQKLP GVKQDGSVSH FFHRTFKAYT 120 TGTKKRRKIN TDELGEVRWN KTGKTKAVVI GGTHLGCKKI MVMYASNVKG GKQEKTNWVM 180 HQYHVGTGED EKDSEFVVSK LFYQQQPKAG EKISEDMGDH MEPVYAVVDL ADCPPLMDLS 240 SLPLEEDNSN QEAVQKSEHN FDQANSHCEV KAKEDINHPA SEKAEDEDRH PSQDPNWWEG 300 ESQFMLNSQQ LAECMSICDE FLQSQNSSGS GDEPGKSRPC LAEYAQLPAD DLKKDLEECQ 360 KLDVSNDTNL ELECTPEFRL SQLDCYATTW IEGKI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 127 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.35297 | 0.0 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG497700.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955196.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-126 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A3L6QCI3 | 0.0 | A0A3L6QCI3_PANMI; NAC domain-containing protein 8-like | ||||
STRING | Pavir.Ab02919.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-129 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG497700.2.p |