PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG493900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 329aa MW: 35763.2 Da PI: 4.3472 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Pavir.1KG493900.1.p 75 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 128 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4e-42 | 74 | 166 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ L +++++Lr++ Pavir.1KG493900.1.p 74 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDLLLQDNHRLRSQ 163 69**************************************************************************************99 PP HD-ZIP_I/II 91 lke 93 +++ Pavir.1KG493900.1.p 164 VAS 166 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.37E-20 | 68 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.22 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-20 | 73 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.27E-20 | 75 | 131 | No hit | No description |
Pfam | PF00046 | 7.4E-18 | 75 | 128 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 76 | 137 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.1E-6 | 101 | 110 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.1E-6 | 110 | 126 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.9E-17 | 130 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MESSRLIFSA TGSGAGQMFF LDCGAGGVPG GGGLFHRGGR PVLGLEEGRG VKRPFFTSPD 60 ELLEEEYYDE QLPEKKRRLT PEQVHLLERS FEEENKLEPE RKTELARKLG LQPRQVAVWF 120 QNRRARWKTK QLERDFDRLK ASFDALRADH DLLLQDNHRL RSQVASLTEK LQEKEGTEGG 180 ASADADAAAL PVDVKLASLA DEDVDEPPAE AFEAHQQVKS EDRLSTGSGG SAVVDTDALL 240 CGQLAAAVDS SVESYFPGGE DYHDCGMGGP VNHCPGGIQS DDDGAGSDEG CSYYPEDEAA 300 AAVFFAGHGH PHAEDDEDAG QIGWWMWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.6986 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG493900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065267 | 0.0 | BT065267.1 Zea mays full-length cDNA clone ZM_BFb0074N09 mRNA, complete cds. | |||
GenBank | BT065352 | 0.0 | BT065352.1 Zea mays full-length cDNA clone ZM_BFb0114N22 mRNA, complete cds. | |||
GenBank | BT086586 | 0.0 | BT086586.1 Zea mays full-length cDNA clone ZM_BFc0188G07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813024.1 | 1e-177 | homeobox-leucine zipper protein HOX16-like isoform X1 | ||||
Swissprot | Q6YWR4 | 1e-137 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A2T7FC04 | 1e-177 | A0A2T7FC04_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02950.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-67 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG493900.1.p |
Publications ? help Back to Top | |||
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