PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG489900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 417aa    MW: 44927.4 Da    PI: 8.8548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG489900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.5e-16168217255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  Pavir.1KG489900.1.p 168 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLMEVIEYIRFLQ 217
                          889*************************7....7*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-18164228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-22164232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.59166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-16168221No hitNo description
PfamPF000104.9E-14168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-11172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GGSSSPVQHS AQGYDLGVHT SLKPLKLGKR RRGGGGAIGV  60
APSGLEADSE EHLLPGGVGT FSIRQAPSTA HQPRGQPAGH GVVATAAFAP VLHGSGTEAT  120
HGAESGARAH SGPASMWQDS GTDQRSRATR GEGRSSGSSG DQGPNTPRSK HSATEQRRRT  180
KINDRLEILR ELLPHGDQKR DKASFLMEVI EYIRFLQEKV QKYESAHPQK NHEDSSMPWA  240
KVYYRSCWKN TESITQVQGG GSSVPTQDMN KEQYCSNKTT VAPTLFSTHS AGETSIDDIS  300
SRKATSTPQN WADDSTPSKQ PPWLSMSTSD SGNKTPSKNE KQTLHEDTRS LSNAYSQGLL  360
NRLTQALKSS GVDPSQASIS VEINMDKRAT EPSNTHGNLK DNECEETIHL TKKLRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450LKLGKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.325560.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG489900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798281.10.0transcription factor BIM2-like isoform X1
TrEMBLA0A2S3GTA60.0A0A2S3GTA6_9POAL; Uncharacterized protein
STRINGPavir.Aa00700.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-40BES1-interacting Myc-like protein 2