PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG487100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 407aa    MW: 44535.8 Da    PI: 4.9914
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG487100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06445540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+ +++++  ++C+++   lC +C  + H+       Ht++
  Pavir.1KG487100.2.p  4 LCDFCGKQRSMIYCRSDVASLCLSCDRNVHSAnalsrrHTRT 45
                         7*****************************657888889876 PP
2zf-B_box17.21.1e-054788540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+++ ++++   C + ++ lC++C  ++H        H+++
  Pavir.1KG487100.2.p 47 LCDRCCSQPAAVRCIEENTSLCQNCDWNGHDAasgatgHKRQ 88
                         7*****************************447778888876 PP
3CCT62.51.3e-21349392144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Pavir.1KG487100.2.p 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 392
                          899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.9E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
CDDcd000211.24E-5447No hitNo description
PROSITE profilePS501198.7744390IPR000315B-box-type zinc finger
CDDcd000213.45E-44790No hitNo description
SMARTSM003360.894890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368349391IPR010402CCT domain
PfamPF062031.1E-16349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD VASLCLSCDR NVHSANALSR RHTRTLLCDR CCSQPAAVRC  60
IEENTSLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN  120
CEDGMSMMTI DEGDVTNHCD ASDDKRLLEI ASTTLMSDPP TGDKLKPLIG TSSGDGFNVL  180
PLATDQHAGS VSMAQKVPYA ADDDKFNDGM YEDLCVDDTD LTFENYEELF GTTHIQTEQL  240
FDDAGIDSYF EMKEMPPFDS NEEPKYMQLE CSNVVSADSA MSNPGARVDS SLCIPVRQVR  300
SSISQSFSGL TGESSPGDHQ DCGVSPMLLM GGPPWHPPGP EGSVAGGSRD SALTRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL SLTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.170675e-95callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG487100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-120COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2S3GT850.0A0A2S3GT85_9POAL; Uncharacterized protein
TrEMBLA0A2T7FBG30.0A0A2T7FBG3_9POAL; Uncharacterized protein
STRINGPavir.Ab03034.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-94B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]