PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG487100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CO-like | ||||||||
Protein Properties | Length: 407aa MW: 44535.8 Da PI: 4.9914 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ ++C+++ lC +C + H+ Ht++ Pavir.1KG487100.1.p 4 LCDFCGKQRSMIYCRSDVASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 17.2 | 1.1e-05 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ ++++ C + ++ lC++C ++H H+++ Pavir.1KG487100.1.p 47 LCDRCCSQPAAVRCIEENTSLCQNCDWNGHDAasgatgHKRQ 88 7*****************************447778888876 PP | |||||||
3 | CCT | 62.5 | 1.3e-21 | 349 | 392 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ Pavir.1KG487100.1.p 349 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 392 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.9E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.94 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.24E-5 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.774 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.45E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.89 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.368 | 349 | 391 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-16 | 349 | 391 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MAALCDFCGK QRSMIYCRSD VASLCLSCDR NVHSANALSR RHTRTLLCDR CCSQPAAVRC 60 IEENTSLCQN CDWNGHDAAS GATGHKRQAI NCYSGCPSSA ELSRIWSFVM DIPTVAAEPN 120 CEDGMSMMTI DEGDVTNHCD ASDDKRLLEI ASTTLMSDPP TGDKLKPLIG TSSGDGFNVL 180 PLATDQHAGS VSMAQKVPYA ADDDKFNDGM YEDLCVDDTD LTFENYEELF GTTHIQTEQL 240 FDDAGIDSYF EMKEMPPFDS NEEPKYMQLE CSNVVSADSA MSNPGARVDS SLCIPVRQVR 300 SSISQSFSGL TGESSPGDHQ DCGVSPMLLM GGPPWHPPGP EGSVAGGSRD SALTRYKEKK 360 KRRKFDKKIR YASRKARADV RKRVKGRFIK AGEAYDYDPL SLTRSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 358 | 362 | KKKRR |
2 | 358 | 363 | KKKRRK |
3 | 359 | 363 | KKRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17067 | 5e-95 | callus| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG487100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827948.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9LUA9 | 1e-120 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A2S3GT85 | 0.0 | A0A2S3GT85_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7FBG3 | 0.0 | A0A2T7FBG3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab03034.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 5e-94 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG487100.1.p |
Publications ? help Back to Top | |||
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