PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG469600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 421aa    MW: 44998.3 Da    PI: 7.2152
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG469600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.51.6e-28162215358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          ++rY+eCl+NhAa+lG+h++DGC+Efmps g+   aaal CaACgCHR+FHRre +
  Pavir.1KG469600.1.p 162 QWRYRECLRNHAARLGAHVLDGCCEFMPSAGDG--AAALACAACGCHRSFHRREAV 215
                          789**************************6666..99****************975 PP
2Homeobox154.3e-05313369153
                          TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          +r Rt+ft+eq +++ e+ +    + ++p+ ++     +++g++ r+ kvW +N + 
  Pavir.1KG469600.1.p 313 KRFRTKFTAEQKDRMREFAHrlgwRINKPDSDAVDAFCDQVGVSRRVLKVWMHNNKH 369
                          789***********987655888779****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-25163214IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-8164213IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-23164213IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.765165213IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.4E-30303371IPR009057Homeodomain-like
SuperFamilySSF466895.82E-19305370IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27312368IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MEYKRSSHVE EEEGEEEEVE DEEEEEEDEE EEARGHRYTT AAAAPVGAPQ QQQVHAQALG  60
LGSHASLMDA AAFSRPRLPP DSSLVTQPPL PPPGFMPAQR QPQLHPRRGE RERAAGAPPP  120
QPRRHQEGAR NGVLGGGTVS PAASTLTLAP GAGAVVPVEA TQWRYRECLR NHAARLGAHV  180
LDGCCEFMPS AGDGAAALAC AACGCHRSFH RREAVPGAAP AVSPSPATPT ANSSRVMPLL  240
LPPPHMQTTR PHVPVSPSSA PAALTESSSE ELRGPAPAPA AAHPAPPPTL PPHAHAQLAV  300
GGSASAPPAP SKKRFRTKFT AEQKDRMREF AHRLGWRINK PDSDAVDAFC DQVGVSRRVL  360
KVWMHNNKHL AKMPPSPSPP SSQSPPPPHH RHDHHPPPPP HQIHLHQPPP PPQQQQQHDA  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-213113691674ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.161480.0stem
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG469600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537793e-90BT053779.1 Zea mays full-length cDNA clone ZM_BFb0160J16 mRNA, complete cds.
GenBankBT0667343e-90BT066734.1 Zea mays full-length cDNA clone ZM_BFb0060G17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826471.11e-157zinc-finger homeodomain protein 7-like
SwissprotQ8S3Q91e-83ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A2S3GSI01e-156A0A2S3GSI0_9POAL; Uncharacterized protein
STRINGSi020227m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.12e-26homeobox protein 28